Paternal and maternal DNA lineages

Mitochondria are organelles that lie in the cytoplasm of eukaryotic cells, such as those of humans. Their primary purpose is to provide energy to the cell. Mitochondria are thought to be the vestigial remains of symbiotic bacteria that were once free living.[citation needed] One indication that mitochondria were once free living is that they contain their own circular DNA genome, mitochondrial DNA (mtDNA). Mitochondrial DNA is independent of autosomal DNA contained in chromosomes in the nucleus of the cell. Individuals inherit their cytoplasm and the organelles it contains exclusively from their mothers. The mitochondrial of the sperm are destroyed when the ovum (egg cell) is fertilized.

When a mutation arises in mtDNA molecule, the mutation is therefore passed in a direct female line of descent. These rare mutations are derived from copying mistakes—when the DNA is copied it is possible that a single mistake occurs in the DNA sequence, an outcome which is called a single nucleotide polymorphism (SNP).

Human Y chromosomes are male-specific sex chromosomes; nearly all humans that possess a Y chromosome will be morphologically male. Y chromosomes are therefore passed from father to son; although Y chromosomes are situated in the cell nucleus, they only recombine with the X chromosome at the ends of the Y chromosome; the vast majority of the Y chromosome (95%) does not recombine. When mutations (SNPs, and STR copying mistakes) arise in the Y chromosome, they are passed down directly from father to son in a direct male line of descent. The Y-DNA and mtDNA therefore share a certain feature: they both pass down unchanged except for mutations.

The other chromosomes, autosomes and X chromosomes in women, share their genetic material (called crossing over leading to recombination) during meiosis (a special type of cell division that occurs for the purposes of sexual reproduction). Effectively this means that the genetic material from these chromosomes gets mixed up in every generation, and so any new mutations are passed down randomly from parents to offspring.

The special feature that both Y-DNA and mtDNA share, above, preserves a "written" record of their mutations because neither DNA gets mixed up or randomized—mutations remain fixed in place on both types of DNA. Furthermore the historical sequence of these mutations can also be inferred. For example, if a set of ten Y chromosomes (derived from ten different men) contains a mutation, A, but only five of these chromosomes contain a second mutation, B, it must be the case that mutation B occurred after mutation A.

Furthermore all ten men who carry the chromosome with mutation A are the direct male line descendants of the same man who was the first to carry this mutation. The first man to carry mutation B was also a direct male line descendant of this man, but is also the direct male line ancestor of all men carrying mutation B. Series of mutations such as this form molecular lineages. Furthermore each SNP mutation may define a set of specific Y chromosomes called a haplogroup.

All men carrying SNP mutation A form a single haplogroup, and all men carrying mutation B are part of this haplogroup, but mutation B (if a SNP) may also define a more recent haplogroup (which is a subgroup or subclade) of its own which men carrying only mutation A do not belong to. Both mtDNA and Y chromosomes or Y-DNA are grouped into lineages and haplogroups; these are often presented as tree-like diagrams.

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